Function reference
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adjust_reserve_actuators_osim()
- Adjust Reserve Actuators to Align with Pelvis Center of Mass
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analyse_angular_momentum_com()
- Analyse Angular Momentum for a Model
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analyse_angular_momentum_com_file()
- Analyse Angular Momentum for a Model
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analyse_frequency_content()
- Analyse Frequency Content of a Data Frame
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analyse_joint_power()
- Analyse joint power
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analyse_joint_power_file()
- Analyse joint power
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analyse_muscle_power()
- Analyse muscle power
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analyse_muscle_power_file()
- Analyse muscle power
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append_local_marker()
- Append a Marker Defined in a Local Coordinate System to Global Data
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compute_cutoff_correction()
- Compute Corrected Cutoff Frequency for Filter
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compute_cutoff_correction_highpass()
- Compute Corrected Cutoff Frequency for Highpass Filter
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compute_cutoff_correction_lowpass()
- Compute Corrected Cutoff Frequency for Lowpass Filter
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compute_derivative()
- Compute Derivative of Data
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compute_derivative_df()
- Compute Derivatives for Each Column in Data Frame
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compute_frame_generic()
- Compute a Reference Frame from Three Non-Colinear Markers
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compute_frame_orientation()
- Compute Frame Orientation
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compute_hjc_regression()
- Compute Hip Joint Center using Harrington's of Bell and Brand's Method
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compute_impulse()
- Compute Area Under the Curve (AUC) Using Trapezoidal Integration
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compute_jc_mid()
- Compute Euclidean Average of Two 3D Vectors
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compute_jc_score()
- Compute Joint Centre Using the SCoRE Method
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compute_joint_angles()
- Compute Joint Angles from Rotation Frames
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compute_moment_arm_curve()
- Compute Moment Arm Curve for a Muscle-Coordinate Pair in an OpenSim Model
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compute_muscle_length_anatomical()
- Compute Anatomical Muscle Lengths from an OpenSim Model
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compute_muscle_moment()
- Compute Joint Moments from Muscle Forces and Moment Arms
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compute_muscle_volume_scale_factor()
- Calculate Strength Scale Factor Based on Height and Mass
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compute_rmse()
- Compute Root Mean Square Error (RMSE) with Normalization Options (untested)
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compute_rotation_between_frames()
- Compute Rotation Between Frames
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compute_strain()
- Compute Muscle-Tendon Unit (MTU) Strain
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compute_torque_com()
- Compute Torque at Center of Mass (COM)
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compute_work()
- Compute Area Under the Curve (AUC) Using Trapezoidal Integration
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create_rotation_matrix()
- Create a 3D Rotation Matrix
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create_rotation_matrix_from_vector()
- Convert Rotation Vector to Rotation Matrix
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extract_markerset_info()
- Extract Marker Set Information from OpenSim marker set file
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filter_lowpass_pad_df()
- Filter Markers with Padding to Avoid Artifacts
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get_analog_c3d_osim()
- Get Analog Data from C3D File
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get_EMG_c3d_osim()
- Get EMG Data from C3D File
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get_hex_colors()
- Generate Hex Colors from a Color Scale
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osim_run_cmd()
- Run OpenSim Command Line Tool
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osim_viz_model_cmd()
- Visualize OpenSim Model
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osim_viz_motion_cmd()
- Visualize Motion Using OpenSim
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osim_viz_trc_cmd()
- Visualize Marker Data in OpenSim
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prescribe_motion_osim()
- Prescribe Motion to OpenSim Model
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read.trc()
- Read a trc file
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read_mot_sto()
- Read OpenSim MOT or STO File as Data Frame
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read_trc()
- Read TRC File into Data Frame
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remove_side_osim()
- Remove Side from OpenSim Model
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replace_side_torque_osim()
- Replace Side Torque in OpenSim Model
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resample()
- Resample a numeric data frame (where the first column represents time) to the specified sample rate
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rigid_body_transformed_markers_svd()
- Apply Rigid Body Transformation to Markers Using SVD
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rigid_transform_svd()
- Rigid Body Transformation (Söderkvist & Wedin Method) Between Two Marker Frames
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rotate_coords()
- Rotate 3D Coordinates Using a Rotation Matrix
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rotate_markers()
- Rotate 3D Marker Coordinates in a Data Frame
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rotate_osim_table()
- Rotate an Opensim Data Table
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setup_body_kinematics_xml()
- Set Up Body Kinematics XML for Analysis
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setup_external_loads_xml()
- Setup External Loads XML
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setup_induced_acceleration_rolling_xml()
- Set Up Induced Acceleration Rolling XML for Simulation
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setup_inverse_dynamics_xml()
- Set Up Inverse Dynamics XML for Simulation
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setup_inverse_kinematics_xml()
- Setup Inverse Kinematics XML
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setup_joint_reaction_osim()
- Setup Joint Reaction for OpenSim Analysis
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setup_joint_reaction_xml()
- Set Up Joint Reaction XML for Simulation
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setup_kinematic_analysis_osim()
- Setup Kinematic Analysis for OpenSim
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setup_kinematic_analysis_xml()
- Set Up Kinematic Analysis XML for Simulation
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setup_muscle_analysis_osim()
- Setup Muscle Analysis for OpenSim
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setup_muscle_analysis_xml()
- Set Up Muscle Analysis XML for Simulation
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setup_scale_xml()
- Setup Scale XML
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setup_static_optimisation_xml()
- Set Up Static Optimization XML for Simulation
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strength_scale_osim()
- Scale Muscle Strength in OpenSim Model
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strength_update_handsfield_osim()
- Update Muscle Strength in OpenSim Model Using Handsfield Method
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Time_normalise()
- Time normalises continuous data
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update_max_contraction_velocity_osim()
- Update Maximum Contraction Velocity in an OpenSim Model
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update_muscle_colours_osim()
- Update OpenSim Muscle Colours
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visualise_2D_marker_position()
- Visualize 2D Marker Data in Selected Plane
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visualise_2D_segment_position()
- Visualize 2D Marker Data with Segments
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visualise_3D_frame()
- Add a 3D Reference Frame to a Plotly Object
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visualise_3D_marker_position()
- Visualize 3D Marker Position
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visualise_3D_segment_position()
- Visualize 3D Marker Positions and Segments
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visualize_3D_marker_frame_position()
- Visualize 3D Marker Frame Position
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write.trc()
- Write a trc file
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write_force_mot()
- Write GRF Data Frame to File
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write_mot_sto()
- Write Data Frame to OpenSim MOT or STO File
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write_trc()
- Write TRC File from Data Frame